I'm going to put down how I go about it, previous topics or no
The SRS I use is Anki. I have the pre-made Heisig Anki deck. The actual reps are done on my iPod touch using iAnki, the web-app version of Anki that syncs to the desktop Anki program.
Basically, there are times in my daily routine where I've gotten into the habit of doing my Kanji SRS reps - while waiting for the water to heat up for my morning ablutions, and during my commute to and from work. As my commute is walk -> bus -> walk -> subway -> walk there are plenty of times where I'm not doing anything, perfect to take out the iPod and do some reps. The downside is I tend to forget on weekends!
At work, I sync my iPod reps with the desktop Anki application. I've got most of the Heisig deck suspended, and I add 20 (or so) new cards every two days (or so). That's because the iAnki app doesn't check the "new cards per day" setting in Anki, so it will keep chucking new cards at me until I choke if I don't do this.
When I'm adding (or rather, unsuspending) new cards, I read the Heisig entries for those Kanji, and check Reviewing the Kanji for good stories that resonate with me. I add the story to each card in turn.
I've modified the Heisig card format so each card has a "Story" text link; if I press that, it displays the story for that card. The plan is to not use the story, but it's there if I need it.
I have three other decks I review - Hiragana and Katakana, which I started ages ago and usually only have 1 or two due cards a day, and "Japanese Classes", a deck I constructed from the classes I took last year.
I almost completely neglected my Heisig while I took those classes, which I regret; now I've decided the priority is Heisig, Hiragana/Katakana and
then the stuff from the classes, if I have time. If I take actual taught classes this year, I'm going to keep to the same priority; I think Heisig is going to help me more long-term than the bits and bobs I will get in class.
So my routine is: Reps in the morning on the way to work -> sync reps -> maybe add new cards -> reps in the evening on the way back home. Lather, rinse, repeat.